Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs4881711 chr11:50327500 G/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.61 -0.78 1.18E-80 Box Plot
BLCA rs4881714 chr11:50336223 C/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.66 -0.78 7.53E-81 Box Plot
BLCA rs4963083 chr11:50415438 C/T cg15704280 chr7:45808275 SEPT13 -1.02 -24.1 -0.78 1.53E-78 Box Plot
BLCA rs4963091 chr11:50383960 C/T cg15704280 chr7:45808275 SEPT13 -1.02 -24.62 -0.78 1.04E-80 Box Plot
BLCA rs55924097 chr3:125752272 T/C cg26321609 chr3:123680480 CCDC14 -1.18 -25.38 -0.79 7.81E-84 Box Plot
BLCA rs56687083 chr9:33132134 A/G cg04842962 chr6:43655489 MRPS18A 1.05 26.95 0.81 3.27E-90 Box Plot
BLCA rs56687083 chr9:33132134 A/G cg20290983 chr6:43655470 MRPS18A 1.06 26.84 0.81 9.01E-90 Box Plot
BLCA rs58822313 chr16:68723459 AG/A cg04657470 chr2:198365150 HSPE1;HSPD1 1.08 24.46 0.78 4.92E-80 Box Plot
BLCA rs59453134 chr21:33947729 T/C cg09050820 chr6:167586206 TCP10L2 0.97 25.51 0.79 2.39E-84 Box Plot
BLCA rs60179307 chr3:125712049 A/G cg26321609 chr3:123680480 CCDC14 -1.18 -26.89 -0.81 5.83E-90 Box Plot
BLCA rs6438958 chr3:125751135 C/G cg26321609 chr3:123680480 CCDC14 -1.1 -24.1 -0.78 1.46E-78 Box Plot
BLCA rs6438960 chr3:125762131 G/A cg26321609 chr3:123680480 CCDC14 1.16 26.17 0.8 4.74E-87 Box Plot
BLCA rs6438961 chr3:125762402 T/C cg26321609 chr3:123680480 CCDC14 1.16 25.86 0.8 8.49E-86 Box Plot
BLCA rs6597898 chr11:50231951 C/T cg15704280 chr7:45808275 SEPT13 -1.03 -24.94 -0.79 5.16E-82 Box Plot
BLCA rs67106454 chr11:50415764 AC/A cg15704280 chr7:45808275 SEPT13 -1.02 -24.1 -0.78 1.53E-78 Box Plot